source(paste0(root.dir, 'scripts/myRLib.R'))
funcset <- readLines(paste0(root.dir, 'output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/sig_subset.set'))
funcset <- parseFuncSet(funcset)
funcset.names <- names(funcset)
xtyi.files <- strsplit('output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e+00.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-04.assoc.logistic:output-direction_XT_YI/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
ps <- strsplit('1,0.3,0.1,0.03,0.01,0.003,0.001,0.0003,0.0001', ',')[[1]]
inter.files <- strsplit('output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e+00.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-04.assoc.logistic:output-run_step2/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
prs.files <- strsplit('../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e+00.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-01.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-01.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-02.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-02.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-03.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-03.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-04.txt:../step1/output-run_step1/MAGNETIC_LDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-04.txt', ':')[[1]]
for (i in 1:length(xtyi.files)) {
cat("##", funcset.names[i])
cat("
")
cat("
")
snp.subset <- funcset[[funcset.names[i]]]
# read I ~ SNP
prs <- read.table(paste0(root.dir, prs.files[i]), header = T)
prs$sid <- as.character(prs$sid)
prs.sub <- prs[prs$sid %in% snp.subset, ]
# read others
xtyi <- read.table(paste0(root.dir, xtyi.files[i]), header = T)
xtyi$SNP <- as.character(xtyi$SNP)
yt.xtyi <- xtyi[(xtyi$SNP %in% snp.subset) & (xtyi$SNP %in%
prs.sub$sid), ]
yt.xtyi.xt <- yt.xtyi[yt.xtyi$TEST == "ADD", ]
yt.xtyi.yi <- yt.xtyi[yt.xtyi$TEST == "PRS", ]
inter <- read.table(paste0(root.dir, inter.files[i]), header = T)
inter$SNP <- as.character(inter$SNP)
inter <- inter[inter$TEST == "ADDxPRS", ]
yt.inter <- inter[(inter$SNP %in% snp.subset) & (inter$SNP %in%
prs.sub$sid), ]
# order all rows
yt.xtyi.xt <- yt.xtyi.xt[order(yt.xtyi.xt$SNP), ]
yt.xtyi.yi <- yt.xtyi.yi[order(yt.xtyi.yi$SNP), ]
yt.inter <- yt.inter[order(yt.inter$SNP), ]
prs.sub <- prs.sub[order(prs.sub$sid), ]
# check direction
prs.sub$nt1 <- as.character(prs.sub$nt1)
yt.xtyi.xt$A1 <- as.character(yt.xtyi.xt$A1)
yt.inter$A1 <- as.character(yt.inter$A1)
if (sum(prs.sub$nt1 != yt.xtyi.xt$A1) != 0 | sum(prs.sub$nt1 !=
yt.inter$A1) != 0) {
print("Direction does not match. Exit!")
quit()
}
yt.xtyi.xt.mean.std <- getMeanStd(yt.xtyi.xt$SNP, yt.xtyi.xt$P,
yt.xtyi.xt$OR, "Y~Gi+I (Gi)")
yt.xtyi.yi.mean.std <- getMeanStd(yt.xtyi.yi$SNP, yt.xtyi.yi$P,
yt.xtyi.yi$OR, "Y~Gi+I (I)")
yt.inter.mean.std <- getMeanStd(yt.inter$SNP, yt.inter$P,
yt.inter$OR, "Y~Gi*I")
prs.sub.mean.std <- data.frame(SNP = prs.sub$sid, Mean = prs.sub$ldpred_beta,
Std = 0, Type = "I~Gi")
# create data frame for plot
df <- rbind(yt.xtyi.xt.mean.std, yt.xtyi.yi.mean.std, prs.sub.mean.std,
yt.inter.mean.std)
ratio <- max(1, nrow(yt.inter)/40)
cat
p <- ggplot(df) + geom_point(aes(x = SNP, y = Mean)) + geom_errorbar(aes(x = SNP,
ymin = Mean - 1.96 * Std, ymax = Mean + 1.96 * Std),
colour = "black", width = 0.1) + geom_hline(yintercept = 0,
color = "red") + facet_grid(. ~ Type, scales = "free_x") +
coord_flip() + theme(axis.text.x = element_text(angle = 90,
hjust = 1))
p2 <- ggplot(yt.inter) + geom_bar(aes(x = SNP, y = -log10(P)),
stat = "identity") + coord_flip() + ggtitle("Interaction P-value")
subchunkify(p, ratio)
subchunkify(p2, ratio)
cat("
")
inter.plus.gwas.pval <- cbind(yt.inter, yt.xtyi.xt$P)
colnames(inter.plus.gwas.pval) <- c(colnames(yt.inter), "GWAS.P")
pander(inter.plus.gwas.pval[order(inter.plus.gwas.pval$P,
decreasing = F), ])
cat("
")
cat("
")
}
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.685 | 2.114 | 0.03449 | 3.722e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.717 | 2.112 | 0.03473 | 2.589e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.7399 | -1.969 | 0.04896 | 4.044e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.8314 | -1.249 | 0.2118 | 2.311e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.181 | 1.129 | 0.2589 | 7.542e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.177 | 1.112 | 0.2659 | 1.155e-09 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.186 | 1.061 | 0.2885 | 4.436e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.18 | 1.046 | 0.2956 | 1.381e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.191 | 0.9229 | 0.356 | 2.845e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.18 | 0.894 | 0.3713 | 9.666e-06 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.8844 | -0.8397 | 0.4011 | 3.062e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 0.8822 | -0.8155 | 0.4148 | 1.052e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.319 | 0.7658 | 0.4438 | 3.562e-06 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.126 | 0.736 | 0.4617 | 2.911e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.108 | 0.6996 | 0.4842 | 1.209e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9077 | -0.6681 | 0.504 | 6.55e-11 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9106 | -0.6462 | 0.5182 | 1.158e-09 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9006 | -0.644 | 0.5196 | 8.38e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.089 | 0.5838 | 0.5593 | 7.505e-14 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9204 | -0.5733 | 0.5665 | 4.87e-10 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8755 | -0.5604 | 0.5752 | 3.313e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9038 | -0.5565 | 0.5779 | 6.691e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9045 | -0.5521 | 0.5809 | 6.331e-06 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.076 | 0.5057 | 0.6131 | 3.502e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.073 | 0.4824 | 0.6296 | 3.956e-13 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.073 | 0.482 | 0.6298 | 3.858e-14 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9216 | -0.4492 | 0.6533 | 8.509e-06 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.063 | 0.4176 | 0.6762 | 1.008e-12 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.077 | 0.4131 | 0.6795 | 2.203e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.9427 | -0.3941 | 0.6935 | 2.699e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.065 | 0.3901 | 0.6965 | 5.49e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.028 | 0.1878 | 0.8511 | 3.572e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 1.022 | 0.1314 | 0.8955 | 1.246e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 1.021 | 0.1271 | 0.8989 | 1.407e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9845 | -0.107 | 0.9148 | 2.301e-07 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9919 | -0.0509 | 0.9594 | 4.151e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.007 | 0.0401 | 0.968 | 3.755e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9946 | -0.03365 | 0.9732 | 4.201e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.731 | 2.28 | 0.02261 | 3.785e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.75 | 2.241 | 0.02505 | 2.654e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.745 | -1.993 | 0.04629 | 3.946e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.216 | 1.378 | 0.1682 | 7.58e-09 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.277 | 1.359 | 0.1742 | 9.328e-06 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.207 | 1.338 | 0.181 | 1.181e-09 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.8287 | -1.318 | 0.1874 | 2.288e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.171 | 1.017 | 0.3089 | 2.923e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.164 | 0.986 | 0.3241 | 4.336e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.155 | 0.948 | 0.3431 | 1.402e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8767 | -0.9444 | 0.3449 | 1.197e-09 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.185 | 0.9288 | 0.353 | 2.847e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.138 | 0.9205 | 0.3573 | 1.215e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8828 | -0.895 | 0.3708 | 6.791e-11 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.8871 | -0.8604 | 0.3895 | 5.07e-10 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.342 | 0.8476 | 0.3966 | 3.558e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8349 | -0.7917 | 0.4285 | 3.461e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9007 | -0.7421 | 0.458 | 3.107e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.8943 | -0.7149 | 0.4747 | 8.469e-06 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.09 | 0.6143 | 0.539 | 3.613e-14 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.8989 | -0.6119 | 0.5406 | 6.864e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9021 | -0.5917 | 0.5541 | 6.499e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.083 | 0.5683 | 0.5699 | 7.105e-14 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 0.921 | -0.5563 | 0.578 | 1.038e-05 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.076 | 0.5221 | 0.6016 | 3.281e-13 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9156 | -0.5066 | 0.6124 | 8.736e-06 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.073 | 0.5025 | 0.6153 | 3.709e-13 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.068 | 0.4706 | 0.6379 | 9.497e-13 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.082 | 0.4607 | 0.645 | 2.127e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.067 | 0.4199 | 0.6746 | 5.635e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9553 | -0.3251 | 0.7451 | 2.365e-07 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.9552 | -0.3173 | 0.751 | 2.609e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.042 | 0.2406 | 0.8099 | 5.244e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 1.019 | 0.1175 | 0.9064 | 1.247e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.015 | 0.1089 | 0.9133 | 3.383e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9834 | -0.1086 | 0.9135 | 4.047e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 1.016 | 0.09959 | 0.9207 | 1.401e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.986 | -0.09117 | 0.9274 | 4.097e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.621 | 2.446 | 0.01444 | 3.921e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.602 | 2.298 | 0.02158 | 2.805e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.369 | 2.148 | 0.03168 | 8.762e-06 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.237 | 1.872 | 0.06126 | 8.176e-09 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.801 | -1.848 | 0.06463 | 3.802e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.221 | 1.78 | 0.07509 | 1.319e-09 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8354 | -1.612 | 0.107 | 1.33e-09 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.213 | 1.545 | 0.1223 | 2.876e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.844 | -1.519 | 0.1288 | 5.716e-10 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.174 | 1.423 | 0.1547 | 1.29e-06 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.851 | -1.41 | 0.1585 | 2.05e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8567 | -1.391 | 0.1642 | 7.711e-11 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.796 | -1.254 | 0.2099 | 3.913e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.115 | 0.9616 | 0.3362 | 3.642e-14 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9067 | -0.8658 | 0.3866 | 2.501e-07 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.258 | 0.8577 | 0.391 | 3.557e-06 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.129 | 0.8216 | 0.4113 | 2.949e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9087 | -0.7639 | 0.4449 | 8.299e-06 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.089 | 0.6905 | 0.4899 | 3.979e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.097 | 0.6723 | 0.5014 | 0.0001037 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9133 | -0.654 | 0.5131 | 7.374e-06 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.076 | 0.6518 | 0.5145 | 9.712e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.073 | 0.6225 | 0.5336 | 3.349e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.071 | 0.6134 | 0.5396 | 3.797e-13 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9199 | -0.6013 | 0.5476 | 6.979e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.069 | 0.5969 | 0.5505 | 7.323e-14 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.074 | 0.5829 | 0.56 | 1.369e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9254 | -0.56 | 0.5755 | 9.438e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.073 | 0.5127 | 0.6082 | 2.238e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.064 | 0.4988 | 0.6179 | 5.716e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9571 | -0.3861 | 0.6994 | 3.399e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9731 | -0.2206 | 0.8254 | 3.597e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9751 | -0.2043 | 0.8381 | 3.644e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9871 | -0.1147 | 0.9086 | 3.226e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.011 | 0.09525 | 0.9241 | 1.011e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.9914 | -0.0739 | 0.9411 | 2.453e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9952 | -0.03792 | 0.9698 | 1.352e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 1.002 | 0.0174 | 0.9861 | 1.224e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.237 | 2.395 | 0.01664 | 8.756e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.31 | 2.232 | 0.02561 | 3.841e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.161 | 2.147 | 0.03183 | 9.123e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.151 | 2.041 | 0.04126 | 1.476e-09 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8724 | -2 | 0.04552 | 1.426e-09 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.285 | 1.987 | 0.04688 | 2.798e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.8768 | -1.926 | 0.05413 | 6.17e-10 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.158 | 1.924 | 0.05438 | 2.743e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.134 | 1.818 | 0.06899 | 1.382e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8938 | -1.656 | 0.09781 | 8.495e-11 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8391 | -1.57 | 0.1164 | 4.234e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8987 | -1.436 | 0.1511 | 3.86e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.908 | -1.382 | 0.1671 | 1.725e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.09 | 1.252 | 0.2104 | 4.478e-14 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9236 | -1.147 | 0.2513 | 2.468e-07 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.08 | 0.9164 | 0.3595 | 0.0001502 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.055 | 0.78 | 0.4354 | 1.206e-12 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.942 | -0.7756 | 0.438 | 7.7e-06 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.122 | 0.7394 | 0.4597 | 3.583e-06 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.051 | 0.7151 | 0.4746 | 4.791e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.05 | 0.7122 | 0.4763 | 4.208e-13 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.051 | 0.6822 | 0.4951 | 1.017e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.042 | 0.6022 | 0.547 | 9.119e-14 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9527 | -0.5743 | 0.5657 | 8.124e-06 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.048 | 0.5272 | 0.598 | 3.238e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.04 | 0.5071 | 0.6121 | 5.5e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9585 | -0.5014 | 0.6161 | 1.051e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9589 | -0.4956 | 0.6202 | 7.666e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.039 | 0.4521 | 0.6512 | 2.766e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9701 | -0.433 | 0.665 | 3.505e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9754 | -0.3204 | 0.7486 | 1.278e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.02 | 0.2611 | 0.794 | 3.575e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9807 | -0.25 | 0.8026 | 1.171e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9849 | -0.2019 | 0.84 | 3.027e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9859 | -0.1892 | 0.8499 | 3.064e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.008 | 0.1124 | 0.9105 | 3.905e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.003 | 0.04107 | 0.9672 | 1.199e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.002 | 0.03291 | 0.9737 | 2.422e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.151 | 2.257 | 0.02398 | 8.889e-06 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.111 | 2.121 | 0.03393 | 9.505e-09 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.119 | 2.084 | 0.03714 | 2.71e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9067 | -2.024 | 0.04298 | 1.436e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.104 | 2.013 | 0.04413 | 1.521e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9099 | -1.953 | 0.05086 | 6.192e-10 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.098 | 1.896 | 0.058 | 1.407e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.175 | 1.885 | 0.05937 | 3.757e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8762 | -1.661 | 0.0968 | 4.22e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9255 | -1.609 | 0.1076 | 8.631e-11 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.152 | 1.584 | 0.1133 | 2.747e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9362 | -1.334 | 0.1822 | 1.593e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.064 | 1.274 | 0.2027 | 5.113e-14 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9447 | -1.157 | 0.2474 | 2.378e-07 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9426 | -1.114 | 0.2652 | 3.91e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.06 | 0.9693 | 0.3324 | 0.0001427 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.051 | 0.9663 | 0.3339 | 1.027e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9543 | -0.8516 | 0.3944 | 7.275e-06 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.039 | 0.7728 | 0.4396 | 1.376e-12 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.035 | 0.6974 | 0.4855 | 5.521e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.034 | 0.6876 | 0.4917 | 4.839e-13 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.073 | 0.6435 | 0.5199 | 3.624e-06 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9726 | -0.5555 | 0.5786 | 3.812e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.027 | 0.5343 | 0.5931 | 1.039e-13 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9745 | -0.4674 | 0.6402 | 1.225e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9735 | -0.4477 | 0.6544 | 8.301e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.027 | 0.444 | 0.6571 | 3.204e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.022 | 0.4025 | 0.6873 | 5.296e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9782 | -0.3993 | 0.6897 | 1.126e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9768 | -0.3903 | 0.6963 | 1.078e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9809 | -0.3676 | 0.7132 | 1.105e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9784 | -0.3621 | 0.7173 | 7.796e-06 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.017 | 0.3423 | 0.7321 | 4.098e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.016 | 0.2445 | 0.8068 | 3.426e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.008 | 0.1523 | 0.8789 | 2.427e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9941 | -0.111 | 0.9117 | 2.872e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9947 | -0.09984 | 0.9205 | 2.906e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.002 | 0.04658 | 0.9628 | 3.47e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.128 | 2.175 | 0.0296 | 9.01e-06 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.11 | 2.167 | 0.03023 | 2.677e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.911 | -2.163 | 0.03053 | 1.441e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9141 | -2.084 | 0.03715 | 6.183e-10 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.093 | 2.007 | 0.04476 | 9.801e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.086 | 1.879 | 0.06027 | 1.58e-09 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.086 | 1.867 | 0.06196 | 1.442e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9304 | -1.681 | 0.09281 | 8.709e-11 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.888 | -1.673 | 0.09436 | 4.121e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.13 | 1.617 | 0.1059 | 3.794e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9405 | -1.4 | 0.1615 | 2.356e-07 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.105 | 1.267 | 0.2051 | 2.74e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.054 | 1.207 | 0.2273 | 5.505e-14 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.052 | 1.105 | 0.2692 | 1.038e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9555 | -1.032 | 0.3022 | 1.537e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.053 | 0.9654 | 0.3343 | 0.0001275 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9618 | -0.7923 | 0.4282 | 7.08e-06 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.034 | 0.7681 | 0.4424 | 1.473e-12 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9655 | -0.7368 | 0.4612 | 4.013e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9694 | -0.697 | 0.4858 | 4.077e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.028 | 0.6275 | 0.5303 | 6.027e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.027 | 0.6132 | 0.5398 | 5.278e-13 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9737 | -0.5677 | 0.5702 | 1.116e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.025 | 0.5523 | 0.5807 | 4.123e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9782 | -0.447 | 0.6549 | 1.205e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9768 | -0.4379 | 0.6614 | 7.977e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.024 | 0.4366 | 0.6624 | 3.46e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.019 | 0.4318 | 0.6659 | 1.122e-13 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.04 | 0.4062 | 0.6846 | 3.692e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9791 | -0.3928 | 0.6945 | 1.036e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9817 | -0.3758 | 0.707 | 1.11e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.016 | 0.3632 | 0.7165 | 2.433e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9809 | -0.3586 | 0.7199 | 7.448e-06 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.012 | 0.2535 | 0.7999 | 5.296e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9938 | -0.1325 | 0.8946 | 3.532e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9943 | -0.1188 | 0.9055 | 2.965e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9947 | -0.1112 | 0.9114 | 2.996e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9979 | -0.03811 | 0.9696 | 3.513e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9051 | -2.272 | 0.02308 | 1.465e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9088 | -2.183 | 0.02905 | 6.302e-10 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.109 | 2.119 | 0.03409 | 2.577e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.124 | 2.09 | 0.03666 | 9.135e-06 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.087 | 1.867 | 0.06185 | 1.02e-08 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.082 | 1.751 | 0.08002 | 1.506e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9264 | -1.748 | 0.08041 | 8.948e-11 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.079 | 1.709 | 0.08741 | 1.666e-09 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.928 | -1.674 | 0.09415 | 2.398e-07 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8908 | -1.604 | 0.1087 | 4.084e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.114 | 1.421 | 0.1553 | 3.926e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.059 | 1.213 | 0.225 | 1.054e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.09 | 1.08 | 0.2804 | 2.794e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.049 | 1.076 | 0.2817 | 5.715e-14 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.056 | 0.9948 | 0.3198 | 0.0001296 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9645 | -0.7956 | 0.4263 | 4.13e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9681 | -0.7204 | 0.4713 | 1.509e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.032 | 0.713 | 0.4759 | 1.534e-12 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.03 | 0.665 | 0.5061 | 4.11e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9673 | -0.6646 | 0.5063 | 6.971e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9734 | -0.5546 | 0.5791 | 4.053e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9743 | -0.5447 | 0.586 | 1.164e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.024 | 0.5254 | 0.5993 | 6.414e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.023 | 0.5071 | 0.6121 | 5.611e-13 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.973 | -0.5016 | 0.616 | 7.624e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9751 | -0.4612 | 0.6446 | 9.9e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.025 | 0.4454 | 0.656 | 3.569e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9767 | -0.4287 | 0.6681 | 7.088e-06 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.018 | 0.3949 | 0.6929 | 2.474e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9817 | -0.3677 | 0.7131 | 1.191e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.015 | 0.3236 | 0.7462 | 1.192e-13 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.986 | -0.2797 | 0.7797 | 1.098e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.16 | 0.8729 | 3.696e-06 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9932 | -0.1442 | 0.8854 | 3.598e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.007 | 0.1401 | 0.8886 | 5.444e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9937 | -0.1303 | 0.8963 | 3.072e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.994 | -0.1246 | 0.9009 | 3.104e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9931 | -0.1213 | 0.9035 | 3.422e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8991 | -2.329 | 0.01986 | 1.504e-09 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.138 | 2.238 | 0.02519 | 9.215e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9037 | -2.22 | 0.02643 | 6.496e-10 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.105 | 1.992 | 0.04635 | 2.523e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9169 | -1.866 | 0.06208 | 2.462e-07 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9219 | -1.785 | 0.07418 | 9.318e-11 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.086 | 1.769 | 0.07691 | 1.083e-08 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.078 | 1.608 | 0.1079 | 1.611e-06 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.076 | 1.571 | 0.1162 | 1.789e-09 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.8988 | -1.431 | 0.1525 | 4.091e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.112 | 1.354 | 0.1757 | 4.103e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.067 | 1.314 | 0.1888 | 1.065e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.064 | 1.077 | 0.2814 | 0.0001366 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.089 | 1.04 | 0.2982 | 2.895e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.045 | 0.9537 | 0.3402 | 6.087e-14 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9649 | -0.7587 | 0.448 | 4.027e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.032 | 0.664 | 0.5067 | 4.121e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.031 | 0.6593 | 0.5097 | 1.628e-12 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9705 | -0.5952 | 0.5517 | 4.058e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.034 | 0.5751 | 0.5652 | 3.601e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.975 | -0.5428 | 0.5872 | 1.52e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9751 | -0.4858 | 0.6271 | 7.005e-06 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.02 | 0.4335 | 0.6646 | 6.925e-13 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9757 | -0.4311 | 0.6664 | 7.427e-06 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9798 | -0.4111 | 0.681 | 1.253e-05 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.019 | 0.4106 | 0.6814 | 6.05e-13 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.019 | 0.3985 | 0.6903 | 2.556e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9779 | -0.391 | 0.6958 | 9.63e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9808 | -0.3379 | 0.7354 | 6.913e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.011 | 0.2343 | 0.8148 | 1.278e-13 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.989 | -0.2192 | 0.8265 | 3.131e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9893 | -0.214 | 0.8306 | 3.163e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9902 | -0.1666 | 0.8677 | 3.285e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9914 | -0.1649 | 0.869 | 1.198e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9929 | -0.1442 | 0.8854 | 3.629e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.007 | 0.1291 | 0.8973 | 5.434e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9972 | -0.05453 | 0.9565 | 1.104e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.003 | 0.03033 | 0.9758 | 3.708e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8961 | -2.326 | 0.02002 | 1.543e-09 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.147 | 2.305 | 0.02115 | 9.491e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9016 | -2.196 | 0.02807 | 6.677e-10 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9121 | -1.914 | 0.0556 | 2.539e-07 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.103 | 1.897 | 0.05777 | 2.527e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9204 | -1.762 | 0.07803 | 9.632e-11 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.086 | 1.72 | 0.08536 | 1.125e-08 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.076 | 1.517 | 0.1294 | 1.69e-06 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.074 | 1.495 | 0.1349 | 1.864e-09 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.076 | 1.438 | 0.1504 | 1.082e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9024 | -1.341 | 0.1798 | 4.063e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.11 | 1.3 | 0.1936 | 4.207e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.066 | 1.077 | 0.2814 | 0.0001411 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.088 | 1.005 | 0.3148 | 2.953e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.041 | 0.8406 | 0.4006 | 6.332e-14 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.965 | -0.6866 | 0.4923 | 4.033e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.042 | 0.6861 | 0.4927 | 3.637e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9699 | -0.6305 | 0.5284 | 3.944e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.03 | 0.6136 | 0.5395 | 4.085e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.029 | 0.592 | 0.5538 | 1.691e-12 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9747 | -0.533 | 0.594 | 1.535e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.022 | 0.4543 | 0.6496 | 2.584e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.979 | -0.3968 | 0.6915 | 6.981e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9786 | -0.3666 | 0.7139 | 7.312e-06 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.017 | 0.3516 | 0.7251 | 7.177e-13 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9806 | -0.3306 | 0.741 | 9.472e-06 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.3251 | 0.7451 | 6.264e-13 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9841 | -0.3146 | 0.753 | 1.312e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9847 | -0.2603 | 0.7947 | 6.819e-06 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9871 | -0.2509 | 0.8019 | 3.167e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9874 | -0.2447 | 0.8067 | 3.2e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9888 | -0.1842 | 0.8539 | 3.189e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.008 | 0.1617 | 0.8716 | 1.317e-13 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.994 | -0.1187 | 0.9055 | 3.66e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.004 | 0.08365 | 0.9333 | 5.402e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9965 | -0.06473 | 0.9484 | 1.194e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 1.003 | 0.05859 | 0.9533 | 1.099e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9954 | -0.04511 | 0.964 | 3.709e-06 |